Class: causaltab interaction

URI: ontology_association:CausaltabInteraction

Parents

• is_a: MitabInteraction

Attributes

Own

• Biological Effect interactor A _0..1
  • Range: Biological_Effect_interactor_enum
  • Example: - None
• Biological Effect interactor B _0..1
  • Range: Biological_Effect_interactor_enum
  • Example: - None
• Causal Regulatory Mechanism _0..1
  • Range: Causal_Regulatory_Mechanism_enum
  • Example: - None
• Causal statement _0..1
  • Range: Psi-miIdentifier
  • Example: psi-mi:"MI:2236"(up-regulates activity) None

Inherited from mitab interaction:

• ID(s) interactor A _0..1
  • Range: Identifier
  • Example: uniprotkb:A9QPL9 None
• ID(s) interactor B _0..1
  • Range: Identifier
  • Example: uniprotkb:Q10589 None
• Alt. ID(s) interactor A _0..*
  • Range: Identifier
  • Example: intact:EBI-15754841 None
• Alt. ID(s) interactor B _0..*
  • Range: String
  • Example: intact:EBI-2476339|intact:EBI-2839059|uniprotkb:A8K4Y4|uniprotkb:Q53G07 None
• Alias(es) interactor A _0..*
  • Range: Identifier
  • Example: psi-mi:a9qpl9_9mono(display_long)|uniprotkb:GP(gene name)|psi-mi:GP(display_short) None
• Alias(es) interactor B _0..*
  • Range: Identifier
  • Example: psi-mi:bst2_human(display_long)|uniprotkb:BST2(gene name)|psi-mi:BST2(display_short)|uniprotkb:Tetherin(gene name synonym)|uniprotkb:HM1.24 antigen(gene name synonym) None
• Interaction detection method(s) _0..1
  • Range: Interaction_detection_method_enum
  • Example: psi-mi:"MI:0006"(anti bait coimmunoprecipitation) None
• Publication 1st author(s) _0..1
  • Range: String
  • Example: Kaletsky et al. (2009) None
• Publication Identifier(s) _0..*
  • Range: Identifier
  • Example: pubmed:19179289|doi:10.1073/pnas.0811014106|imex:IM-15261 None
• Taxid interactor A _0..*
  • Range: TaxidIdentifier
  • Example: taxid:186538(Zaire ebolavirus)|taxid:186538(Zaire ebolavirus) None
• Taxid interactor B _0..*
  • Range: TaxidIdentifier
  • Example: taxid:9606(human)|taxid:9606(Homo sapiens) None
• Interaction type(s) _0..1
  • Range: Interaction_type_enum
  • Example: psi-mi:"MI:0915"(physical association) None
• Source database(s) _0..1
  • Range: Psi-miIdentifier
  • Example: psi-mi:"MI:0465"(DIP) None
• Interaction identifier(s) _0..*
  • Range: Identifier
  • Example: intact:EBI-15754872|imex:IM-15261-2|dip:DIP-185793E None
• Confidence value(s) _0..1
  • Range: Intact-miscoreIdentifier
  • Example: intact-miscore:0.52 None
• Expansion method(s) _0..1
  • Range: Expansion_method_enum
  • Example: - None
• Biological role(s) interactor A _0..1
  • Range: Biological_role_interactor_enum
  • Example: psi-mi:"MI:0499"(unspecified role) None
• Biological role(s) interactor B _0..1
  • Range: Biological_role_interactor_enum
  • Example: psi-mi:"MI:0499"(unspecified role) None
• Experimental role(s) interactor A _0..1
  • Range: Experimental_role_interactor_enum
  • Example: psi-mi:"MI:0496"(bait) None
• Experimental role(s) interactor B _0..1
  • Range: Experimental_role_interactor_enum
  • Example: psi-mi:"MI:0498"(prey) None
• Type(s) interactor A _0..1
  • Range: Psi-miIdentifier
  • Example: psi-mi:"MI:0326"(protein) None
• Type(s) interactor B _0..1
  • Range: Psi-miIdentifier
  • Example: psi-mi:"MI:0326"(protein) None
• Xref(s) interactor A _0..*
  • Range: Identifier
• Xref(s) interactor B _0..*
  • Range: Identifier
• Interaction Xref(s) _0..*
  • Range: Interaction_Xref_enum
  • Example: psi-mi:"MI:0465"(dip) None
• Annotation(s) interactor A _0..1
  • Range: String
  • Example: crc64:BE8AB3B339F63261 None
• Annotation(s) interactor B _0..*
  • Range: String
  • Example: - None
• Interaction annotation(s) _0..*
  • Range: Identifier
  • Example: full coverage:Only protein-protein interactions|curation depth:imex curation None
• Host organism(s) _0..*
  • Range: TaxidIdentifier
  • Example: taxid:9606(human)|taxid:9606(Homo sapiens) None
• Interaction parameter(s) _0..1
  • Range: String
  • Example: - None
• Creation date _0..1
  • Range: Datetime
  • Example: 2017/08/06 None
• Update date _0..1
  • Range: Datetime
  • Example: 2017/08/10 None
• Checksum(s) interactor A _0..1
  • Range: RogidIdentifier
  • Example: rogid:mdZH953i2elFKNtwJcAbPdm6Vvw186538 None
• Checksum(s) interactor B _0..1
  • Range: String
  • Example: rogid:vunnCOscGahFdaeN03pDo/8xW7I9606 None
• Interaction Checksum(s) _0..*
  • Range: Identifier
  • Example: rigid:11bG+XivSz4SlWEEWVkNz5Qspro None
• Negative _0..1
  • Range: Negative_enum
  • Example: false None
• Feature(s) interactor A _0..*
  • Range: String
  • Example: - None
• Feature(s) interactor B _0..*
  • Range: String
  • Example: au1 tag:n-n None
• Stoichiometry(s) interactor A _0..1
  • Range: Stoichiometry_interactor_enum
  • Example: - None
• Stoichiometry(s) interactor B _0..1
  • Range: Stoichiometry_interactor_enum
  • Example: - None
• Identification method participant A _0..1
  • Range: Psi-miIdentifier
  • Example: psi-mi:"MI:0396"(predetermined participant) None
• Identification method participant B _0..1
  • Range: Psi-miIdentifier
  • Example: psi-mi:"MI:0396"(predetermined participant) None

Other properties

See also:		https://github.com/PSICQUIC/psicquic-documentation/blob/develop/MITAB28Format.md