Class: xaf association

line of xAF. xAF is a generalization of GAF designed to work for other ontologies than GO, and for other entities beyond genes and proteins. xAF has the same column headers to GAF, but has fewer restrictions.

URI: ontology_association:XafAssociation

Parents

• is_a: Association - generic association between an entity and an ontological term

Uses Mixin

• mixin: Denormalized - mixin for a denormalized class. A denormalized class is formed from a join of two or more other classes

Children

• GafAssociation - line of GAF

Referenced by Class

Attributes

Own

• db _1..1
  • Description: db part of identifier
  • Range: String
• local id _1..1
  • Description: local part of identifier
  • Range: String
• db object symbol _1..1
  • Range: SymbolType
  • Example: AMOT None
• qualifiers _0..*
  • Range: String
• ontology class ref _1..1
  • Range: OntologyClass
  • Example: GO:0050803 None
• supporting references _1..*
  • Range: Publication
• evidence type _1..1
  • Range: OntologyClass
• with or from _0..*
  • Range: Entity
  • Example: WB:WBVar00000510 None
• aspect _1..1
  • Description: varies by association type
  • Range: String
• db object name _0..1
  • Range: NameType
  • Example: Angiomotin None
• db object synonyms _0..*
  • Range: NameType
  • Example: Angiomotin None
• db object type _0..1
  • Range: String
  • Example: PR:000000001 None
• db object taxon _1..1
  • Range: Taxon
  • Example: NCBITaxon:9606 None
• annotation date _0..1
  • Description: date when annotation was made
  • Range: Datetime
• assigned by _1..1
  • Description: assigned by
  • Range: Provider
• annotation extensions _0..*
  • Description: disjunction
  • Range: AnnotationExtension
  • Example: BFO:0000066(GO:0005829) None
• gene product form _0..1
  • Description: isoform
  • Range: BiologicalEntity