Class: gaf association

line of GAF

URI: ontology_association:GafAssociation

Parents

• is_a: XafAssociation - line of xAF. xAF is a generalization of GAF designed to work for other ontologies than GO, and for other entities beyond genes and proteins. xAF has the same column headers to GAF, but has fewer restrictions.

Uses Mixin

• mixin: Denormalized - mixin for a denormalized class. A denormalized class is formed from a join of two or more other classes
• mixin: GoRelated - mixin for any association that is GO related

Children

• SimpleGafAssociation

Referenced by Class

• GafAssociationDocument gaf association document➞associations _0..* GafAssociation

Attributes

Own

• db _1..1
  • Description: db part of identifier
  • Range: String
• local id _1..1
  • Description: local part of identifier
  • Range: String
• db object symbol _1..1
  • Range: SymbolType
  • Example: AMOT None
• gaf association➞qualifiers _0..*
  • Range: gp2term_relation_enum
• gaf association➞ontology class ref _1..1
  • Description: this must be a GO ID
  • Range: OntologyClass
  • Example: GO:0050803 None
• supporting references _1..*
  • Range: Publication
• evidence type _1..1
  • Range: OntologyClass
• with or from _0..*
  • Range: Entity
  • Example: WB:WBVar00000510 None
• gaf association➞aspect _1..1
  • Description: varies by association type
  • Range: gene_ontology_aspect_enum
• db object name _0..1
  • Range: NameType
  • Example: Angiomotin None
• db object synonyms _0..*
  • Range: NameType
  • Example: Angiomotin None
• gaf association➞db object type _0..1
  • Range: gp_entity_type_enum
  • Example: PR:000000001 None
• db object taxon _1..1
  • Range: Taxon
  • Example: NCBITaxon:9606 None
• annotation date _0..1
  • Description: date when annotation was made
  • Range: Datetime
• assigned by _1..1
  • Description: assigned by
  • Range: Provider
• annotation extensions _0..*
  • Description: disjunction
  • Range: AnnotationExtension
  • Example: BFO:0000066(GO:0005829) None
• gene product form _0..1
  • Description: isoform
  • Range: BiologicalEntity